Well, this time I upgraded us to 4.0.3 PL1 via the shell...this goes MUCH faster than previous patches because I don't have to upload 7000+ small files via ftp. I upload one zipped file and unzip it on the server...whole process takes about 10 minutes.
I'm going through now and doing the post patch cleanup...there may be some template problems and things out of place. I'll get em fixed here shortly.
Thanks for your patience!